| Trinucleotide | DNase I-based bendability [2] |
Consensus bendability [3] |
Trinucleotide | DNase I-based bendability |
Consensus bendability [3] |
| AAA/TTT | 0.1 | 0.05 | CAG/CTG | 9.6 | 6.90 |
| AAC/GTT | 1.6 | 2.65 | CCA/TGG | 0.7 | 3.05 |
| AAG/CTT | 4.2 | 4.70 | CCC/GGG | 5.7 | 5.85 |
| AAT/ATT | 0.0 | 0.35 | CCG/CGG | 3.0 | 3.85 |
| ACA/TGT | 5.8 | 5.50 | CGA/TCG | 5.8 | 7.05 |
| ACC/GGT | 5.2 | 5.30 | CGC/GCG | 4.3 | 5.90 |
| ACG/CGT | 5.2 | 5.30 | CTA/TAG | 7.8 | 5.00 |
| ACT/AGT | 2.0 | 3.90 | CTC/GAG | 6.6 | 6.00 |
| AGA/TCT | 6.5 | 4.90 | GAA/TTC | 5.1 | 4.05 |
| AGC/GCT | 6.3 | 6.90 | GAC/GTC | 5.6 | 5.50 |
| AGG/CCT | 4.7 | 5.05 | GCA/TGC | 7.5 | 6.75 |
| ATA/TAT | 9.7 | 6.25 | GCC/GGC | 8.2 | 9.10 |
| ATC/GAT | 3.6 | 4.45 | GGA/TCC | 6.2 | 5.00 |
| ATG/CAT | 8.7 | 7.70 | GTA/TAC | 6.4 | 5.05 |
| CAA/TTG | 6.2 | 4.75 | TAA/TTA | 7.3 | 4.65 |
| CAC/GTG | 6.8 | 6.65 | TCA/TGA | 10.0 | 7.70 |
No. |
Sequence motif | Bendability [arbitrary units] |
Predicted curvature [degree/helical turn] |
||
| DNaseI | Consensus | DNaseI | Consensus | ||
| Curved DNA | |||||
| 1 | (aaaattttgc)n | 2.8 | 2.4 | 21.1 | 17.4 |
| 2 | (aaaattttcg)n | 2.2 | 2.3 | 16.6 | 17.2 |
| 3 | (tctcaaaaaacgcgaaaaaaccggaaaaaagc)n | 3.2 | 3.2 | 15.4 | 15.9 |
| 4 | (ccgaaaaagg)n | 3.9 | 4.3 | 17.1 | 20.2 |
| 5 | (tctctaaaaaatatataaaaa)n | 4.5 | 3.2 | 27.6 | 18.5 |
| 6 | (ggcaaaaaac)n | 3.2 | 3.3 | 19.2 | 19.5 |
| 7 | ccaaaaatgtcaaaaaataggcaaaaaatgcc - Leishmania tarentolae kinetoplast | 3.9 | 3.5 | 21.8 | 20.5 |
| 8 | aaaaactctctaaaaactctccctagaggggccctagagggc | 5.2 | 4.6 | 13.6 | 12.8 |
| 9 | aaaaactctctaaaaactctctagaggggccctagagggccc | 5.1 | 4.6 | 13.3 | 13.2 |
| 10 | agaattgggacaaaaattggaaatttttaaggg - Columba risoria bent satellite DNA | 3.3 | 3.0 | 13.5 | 12.6 |
| 11 | (aaaaactctctaaaaactctcgaggggccctagagggcccta)n | 5.0 | 4.7 | 13.8 | 10.8 |
| Straight DNA | |||||
| 12 | (atctaatctaacacaacaca)n | 5.1 | 4.4 | 0.8 | 0.8 |
| 13 | actacgttaaatctatcaccgcaagggataaa - OR3 operator region | 5.0 | 4.4 | 10.4 | 7.8 |
| 14 | actacgttaaatctatcaccacaagggataaa - OR3 region, mutated | 4.9 | 4.4 | 10.6 | 8.1 |
| 15 | (a)n - poly-A | 0.100 | 0.063 | 0.002 | 0.002 |
| 16 | (ttttaaaacg)n | 2.8 | 2.5 | 2.3 | 4.2 |
| 17 | (ttttaaaagc)n | 3.6 | 3.3 | 3.0 | 9.6 |
| 18 | (aaaaactctctaaaaactctcgggccctagaggggccctaga)n | 4.9 | 4.6 | 12.8 | 8.3 |