plot.it^Ž Server: List of parameters

1. Free energy of B->A transition from ab initio calculations (dinucleotide)

2. Roll angle of B-form X-ray structures from NDB (dinucleotide)

3. Tilt angle of B-form X-ray structures from NDB (dinucleotide)

4. Twist angle of B-form X-ray structures from NDB (dinucleotide)

5. Roll angle of synthetic DNA from gel migration analysis (dinucleotide)

6. Tilt angle of synthetic DNA from gel migration analysis (dinucleotide)

7. Twist angle of synthetic DNA from gel migration analysis (dinucleotide)

8. Free energy (dG) of DNA melting from calorimetric studies (dinucleotide)

9. Enthalpy (dH) change of DNA melting from calorimetric studies (dinucleotide)

10. Entropy (dS) change of DNA melting from calorimetric studies (dinucleotide)

11. Roll angle (Calladine)

12. Sequence complexity calculated according to J.C. Wootton

13. Molecular weight in Daltons

14. Molecular weight in kilograms

15. DNA rigidity based on a SDAB model of DNA and consensus scale (trinucleotide)

16. Consensus bendability scale for detection of AT and GC type curvature (trinucleotide)

17. DNA rigidity based on a SDAB model of DNA and DNAse I digestion data (trinucleotide)

18. Bendability of DNA from DNAse I digestion experiments (trinucleotide)

19. Roll angle from conformational energy calculations (dinucleotide)

20. Tilt angle from conformational energy calculations (dinucleotide)

21. Twist angle from conformational energy calculations (dinucleotide)

22. Energy of electron interaction

23. Roll angle from chemical constitution of base pairs (dinucleotide)

24. Tilt angle from chemical constitution of base pairs (dinucleotide)

25. Twist angle from chemical constitution of base pairs (dinucleotide)

26. Free energy (dG) of B->Z transition (dinucleotide)

27. Helix-Coil transition (Breslauer)

28. Free energy (dG) of B->A transition from spectroscopy (dinucleotide)

29. B->Z transition (Lisser)

30. DNA rigidity based on a SDAB model of DNA and nucleosome positioning (trinucleotide)

31. Bendability of DNA from nucleosome positioning data (trinucleotide)

32. Energy of polar interaction

33. Free energy change (dG) of DNA melting - SantaLucia et al. (dinucleotide)

34. Enthalpy change (dH) of DNA melting - SantaLucia et al. (dinucleotide)

35. Entropy change (dS) of DNA melting - SantaLucia et al. (dinucleotide)

36. Flexibility of DNA from conformational energy calculations (dinucleotide)

37. DNA double helix stability determined from melting profiles (dinucleotide)

38. Base stacking energy from quantum chemical calculations (dinucleotide)

39. Free energy change (dG) of DNA melting - Sugimoto et al. (dinucleotide)

40. Enthalpy change (dH) of DNA melting - Sugimoto et al. (dinucleotide)

41. Entropy change (dS) of DNA melting - Sugimoto et al. (dinucleotide)

42. Roll angle from NMR data (dinucleotide)

43. Tilt angle from NMR data (dinucleotide)

44. Twist angle from NMR data (dinucleotide)

45. Watson-Crick interaction energy from quantum chemical calculations (dinucleotide)

Andrei Gabrielian, Kristian Vlahovicek & Sándor Pongor